Integrating target capture with whole genome sequencing of recent and natural history collections to explain the phylogeography of wild-growing and cultivated Cannabis

Balant, M.; Vitales, D.; Wang, Z.; Barina, Z.; Fu, L.; Gao, T.; Garnatje, T.; Gras, A.; Hayat, M.Q.; Oganesian, M.; Pellicer, J.; Salami, A.S.; Seregin, A.P.; Stepanyan-Gandilyan, N.; Sultana, N.; Tsooj, S.; Urgamal, M.; Vallès, J.; van Velzen, R.; Pokorny, L.

Авторы: Balant Manica, Vitales Daniel, Wang Zhiqiang, Barina Zoltán, Fu Lin, Gao Tiangang, Garnatje Teresa, Gras Airy, Hayat Muhammad Q., Oganesian Marine, Pellicer Jaume, Salami Alireza S., Seregin Alexey P., Stepanyan-Gandilyan Nina, Sultana Nusrat, Tsooj Shagdar, Urgamal Magsar, Vallès Joan, van Velzen Robin, Pokorny Lisa
Журнал: Plants People Planet
Год издания: 2025
Издательство: John Wiley & Sons Inc.
Местоположение издательства: United States
DOI: 10.1101/2024.10.17.618884
Аннотация: Cannabis has provided important and versatile services to humans for millennia. Domestication and subsequent dispersal have resulted in various landraces and cultivars. Unravelling the phylogeography of this genus poses considerable challenges due to its complex history. We relied on a Hyb-Seq approach (combining target capture with shotgun sequencing), with the universal Angiosperms353 enrichment panel, to explore the genetic structure of wild-growing accessions and cultivars by implementing phylogenomic and population genomic workflows on the same Hyb-Seq data. Our findings support the treatment of Cannabis as a monotypic genus (C. sativa L.), structured into three main genetic groups (E Asia, Paleotropis, and Boreal) with clear phylogeographic signal despite significant levels of admixture. The E Asia group was sister to the Paleotropis and the Boreal groups. Individuals within the Paleotropis group could be further structured into three subgroups: Iranian Plateau, C & S China and Himalayas, and Indoafrica. Individuals from the Boreal group split into two subgroups: Eurosiberia and W Mongolia and Caucasus and Mediterranean. Hemp and drug-type landraces and cultivars consistently matched their putative geographic origin. These findings enhance our understanding of the genetic patterns in Cannabis and provide a framework for future research into its current and past genetic diversity.
Добавил в систему: Серегин Алексей Петрович

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Integrating target capture with whole genome sequencing of recent and natural history collections to explain the phylogeography of wild-growing and cultivated Cannabisстатья

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